Method for Analyzing the Antimicrobial Activity of Peptides via Escherichia coli Expression System
- Authors: Grafskaia E.N.1, Kharlampieva D.D.1, Bobrovsky P.A.1,2, Serebrennikova M.Y.1,2, Lazarev V.N.1,2, Manuvera V.A.1,2
-
Affiliations:
- Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency
- Federal State Autonomous Educational Institution of Higher Education “Moscow Institute of Physics and Technology (National Research University)”
- Issue: Vol 61, No 1 (2025)
- Pages: 25-34
- Section: Articles
- URL: https://vestnikugrasu.org/0555-1099/article/view/683309
- DOI: https://doi.org/10.31857/S0555109925010038
- EDN: https://elibrary.ru/CZLYIY
- ID: 683309
Cite item
Abstract
The test system for an assay of new potential antimicrobial peptides (AMP) based on the expression of recombinant AMP-encoding genes in Escherichia coli cells has been proposed. This method has a number of advantages over the use of chemically synthesized peptides and both approaches effectively complement each other. Our approach does not impose limitations on the AMP size, facilitates high-throughput screening of mutant plasmid libraries, and has lower cost and complexity compared to the use of synthetic peptides. The core of our methodology involves transformation of the model gram-negative bacterium E. coli with plasmids carrying a recombinant AMP-encoding gene regulated by an inducible promoter. Following transcription induction, bacteria synthesize the AMP, which ultimately leads to cell death. The assessment of bacterial growth is carried out either by measuring the optical density of a bacterial culture grown in liquid media in a microplate or by drip seeding of serial culture dilutions on an agar-based nutrient medium.
Keywords
Full Text

About the authors
E. N. Grafskaia
Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency
Author for correspondence.
Email: grafskayacath@gmail.com
Russian Federation, Moscow, 119435
D. D. Kharlampieva
Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency
Email: grafskayacath@gmail.com
Russian Federation, Moscow, 119435
P. A. Bobrovsky
Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency; Federal State Autonomous Educational Institution of Higher Education “Moscow Institute of Physics and Technology (National Research University)”
Email: grafskayacath@gmail.com
Russian Federation, Moscow, 119435; Dolgoprudny, 141701
M. Y. Serebrennikova
Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency; Federal State Autonomous Educational Institution of Higher Education “Moscow Institute of Physics and Technology (National Research University)”
Email: grafskayacath@gmail.com
Russian Federation, Moscow, 119435; Dolgoprudny, 141701
V. N. Lazarev
Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency; Federal State Autonomous Educational Institution of Higher Education “Moscow Institute of Physics and Technology (National Research University)”
Email: grafskayacath@gmail.com
Russian Federation, Moscow, 119435; Dolgoprudny, 141701
V. A. Manuvera
Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency; Federal State Autonomous Educational Institution of Higher Education “Moscow Institute of Physics and Technology (National Research University)”
Email: grafskayacath@gmail.com
Russian Federation, Moscow, 119435; Dolgoprudny, 141701
References
- Muteeb G., Rehman M.T., Shahwan M., Aatif M. // Pharmaceuticals. 2023. V. 16. № 11. P. 1615. https://doi.org/10.3390/ph16111615
- Salam Md.A., Al-Amin Md.Y., Salam M.T., Pawar J.S., Akhter N., Rabaan A.A., Alqumber M.A.A. // Healthcare. 2023. V. 11. № 13. P. 1946. https://doi.org/10.3390/healthcare11131946
- Mba I.E., Nweze E.I. // Yale J. Biol. Med. 2022. V. 95. № 4. P. 445–463.
- Moretta A., Scieuzo C., Petrone A.M., Salvia R., Manniello M.D., Franco A. et al. // Front. Cell. Infect. Microbiol. 2021. V. 11. P. 668632. https://doi.org/10.3389/fcimb.2021.668632
- Browne K., Chakraborty S., Chen R., Willcox M.D., Black D.S., Walsh W.R., Kumar N. // IJMS. 2020. V. 21. № 19. P. 7047. https://doi.org/10.3390/ijms21197047
- Kumar P., Kizhakkedathu J., Straus S. // Biomolecules. 2018. V. 8. № 1. P. 4. https://doi.org/10.3390/biom8010004
- Huan Y., Kong Q., Mou H., Yi H. // Front. Microbiol. 2020. V. 11. P. 582779. https://doi.org/10.3389/fmicb.2020.582779
- Galzitskaya O.V. // IJMS. 2023. V. 24. № 11. P. 9451. https://doi.org/10.3390/ijms24119451
- Agüero-Chapin G., Antunes A., Marrero-Ponce Y. // Antibiotics. 2023. V. 12. № 6. P. 1011. https://doi.org/10.3390/antibiotics12061011
- Yan J., Cai J., Zhang B., Wang Y., Wong D.F., Siu S.W.I. // Antibiotics. 2022. V. 11. № 10. P. 1451. https://doi.org/10.3390/antibiotics11101451
- Bakare O.O., Gokul A., Niekerk L.-A., Aina O., Abiona A., Barker A.M., et al. // IJMS. 2023. V. 24. № 14. P. 11864. https://doi.org/10.3390/ijms241411864
- Bin Hafeez A., Jiang X., Bergen P.J., Zhu Y. // IJMS. 2021. V. 22. № 21. P. 11691. https://doi.org/10.3390/ijms222111691
- Dini I., De Biasi M.-G., Mancusi A. // Antibiotics. 2022. V. 11. № 11. P. 1483. https://doi.org/10.3390/antibiotics11111483
- Cardoso M.H., Orozco R.Q., Rezende S.B., Rodrigues G., Oshiro K.G.N., Cândido E.S., Franco O.L. // Front. Microbiol. 2020. V. 10. P. 3097. https://doi.org/10.3389/fmicb.2019.03097
- Yoshida M., Hinkley T., Tsuda S., Abul-Haija Y.M., McBurney R.T., Kulikov V. et al. // Chem. 2018. V. 4. № 3. P. 533–543. https://doi.org/10.1016/j.chempr.2018.01.005
- Aronica P.G.A., Reid L.M., Desai N., Li J., Fox S.J., Yadahalli S. et al. // J. Chem. Inf. Model. 2021. V. 61. № 7. P. 3172–3196. https://doi.org/10.1021/acs.jcim.1c00175
- Merrifield R.B., Stewart J.Morrow., Jernberg Nils. // Anal. Chem. 1966. V. 38. № 13. P. 1905–1914. https://doi.org/10.1021/ac50155a057
- Bello-Madruga R., Torrent Burgas M. // Comput. Struct. Biotechnol.J. 2024. V. 23. P. 972–981. https://doi.org/10.1016/j.csbj.2024.02.008
- Zhang H.-Q., Sun C., Xu N., Liu W. // Front. Immunol. 2024. V. 15. P. 1326033. https://doi.org/10.3389/fimmu.2024.1326033
- Steiner H., Hultmark D., Engström Å., Bennich H., Boman H.G. // Nature. 1981. V. 292. № 5820. P. 246–248. https://doi.org/10.1038/292246a0
- Casteels P., Ampe C., Jacobs F., Vaeck M., Tempst P. // The EMBO Journal. 1989. V. 8. № 8. P. 2387–2391. https://doi.org/10.1002/j.1460-2075.1989.tb08368.x
- Grafskaia E.N., Pavlova E.R., Latsis I.A., Malakhova M.V., Ivchenkov D.V., Bashkirov P.V., et al. // Materials & Design. 2022. V. 224. P. 111364. https://doi.org/10.1016/j.matdes.2022.111364
- Klock H.E., Lesley S.A. High Throughput Protein Expression and Purification. / Ed. S.A. Doyle. Totowa, NJ: Humana Press, 2009. V. 498. P. 91–103. https://doi.org/10.1007/978-1-59745-196-3_6
- Wiegand I., Hilpert K., Hancock R.E.W. // Nat. Protoc. 2008. V. 3. № 2. P. 163–175. https://doi.org/10.1038/nprot.2007.521
Supplementary files
